| | |
| 03-04-10 | Beth Kirschner | Biositemaps - the CIRWP Explorer and the Editor
|
| 02-25-10 | Rich McEachin | Lithium in Bipolar Disorder
|
| 02-04-10 | Alex Ade | Using Web Services to Access NCIBI Data
|
| 01-21-10 | Tolulola Oyeleye | Automatic classification of bioinformatics abstract text
|
| 12-10-09 | Chris Maher | Analysis of Next Generation transcriptome sequencing to detect chimeric transcripts
|
| 11-11-09 | Weijian Xuan | PubAnatomy: Integrated Exploration of Biomedical Literature and Data in the Context of Mouse Brain Anatomy
|
| 11-05-09 | Josh Buckner | "A gpu enabled package for the R statistical environment"
|
| 10-22-09 | Ben Keller | Finding patterns in biological networks
|
| 10-08-09 | Matt Huyck | "An Overview of VisANT and a Peek Inside"
|
| 10-01-09 | Tolulola Oyeleye | Bioinformatics Tools Categorizer
|
| 09-17-09 | Alla Karnovsky | Overview of the Tools for Visualization and Analysis of Biological Networks Containing Experimental Data
|
| 08-27-09 | Aaron Bookvich | The NCIBI Portal: Highlights and Features
|
| 08-20-09 | Jing Zhang | Tracing Provenance of MiMI Data
|
| 08-13-09 | Yuehua Cui | Identifying novel pathway regulators in eQTL mapping: a systems biology approach
Identifying novel pathway regulators in eQTL mapping: a systems biology approac
|
| 07-23-09 | Anna Shaverdian | A Network Based Pattern Matching Approach to Protein Function Prediction |
| 06-18-09 | Abhik Shah | "anyCloud: python library to run code on a variety of grids and cloud computing platforms"
|
| 06-11-09 | Sirarat Sarntivijai | "Ontology Integration in the Framework of Translational Informatics"
|
| 06-04-09 | Haiming Chen | Functional analysis of gene expression data in bipolar disorder
|
| 05-21-09 | Gang Su | Robust Estimation of Correlation between Metabolomics and Transcriptomics data
|
| 05-07-09 | Jim Cavalcoli | Genomic Resequencing using Illumina Technology
Genomic Resequencing using Illumina Technology (Next-Gen Sequencing)
|
| 04-16-09 | Arzucan Ozgur | Biomedical Information Extraction using Text Mining and Network Analysis Methods
|
| 04-09-09 | Beth Kirschner | "Biositemaps: what, why and how to use them"
|
| 04-02-09 | Ben Keller | Molecular Psychiatry: It's not all downhill (Conference Report)
|
| 03-19-09 | Kay Robbins | Browsing large scale microarray data sets
|
| 03-12-09 | Xiaosong Wang, Maureen Sartor | M-score statistics
|
| 03-05-09 | Yongsheng Bai | Uncovering Genetic Factors Contributing to Type 2 Diabetes an
Diabetic Nephropathy
|
| 02-26-09 | Weijian Xuan | Cross Internet Application Integration
|
| 01-22-09 | Rich McEachin | Comorbid Bipolar Disorder with Nicotine Addiction
|
| 12-04-08 | Mor Peleg | Using the BioWorkflow model to represent and reason with biological systems
|
| 11-20-08 | Marci Brandenburg | Life and Times of the Laptop Librarian
|
| 11-05-08 | Maureen Sartor, Vasu Mahavishnu | Conceptgen: A concept mapping and gene annotation tool
|
| 10-30-08 | Qiang Tian | Loss of N-myc downstream-regulated gene 1 (NDRG1) increases prostate cancer cell invasion by upregulating CCL5
|
| 10-23-08 | Sharon Lewis | Molecular Genetic Analysis of COMT in Bipolar Disorder
|
| 10-16-08 | Wayne Wilson | Storage trends and Medical School Information Systems response
|
| 10-02-08 | Alla Karnovsky, Chris Beecher | Informatics Framework for Metabolomics
|
| 09-18-08 | Ben Keller | Data Mining on NCIBI Data Resources
|
| 09-11-08 | Jean Song | Resources for bioinformatics literature exploration and management
|
| 08-28-08 | Manhong Dai, Tyler Brubaker, Walter Meixner | High performance computing with the Depression Center-NCIBI cluster
|
| 08-22-08 | Jim Cavalcoli | Technology Basics: Nucleic Acid Hybridization and Sequencing Methods
|
| 07-31-08 | Jim Cavalcoli, Justin Wilson | Low level deep sequencing data analysis: from preprocessing to alignment and Meeting Report from ISMB 2008
|
| 07-24-08 | Bill Worzel | Asking the right question: Using genetic programming to understand molecular data
|
| 07-10-08 | Manhong Dai, Weijian Xuan | PubOnto: Open Biomedical Ontology-Based Medline Exploration (Bio-Ontologies SIG) and PASS: A Fast Algorithm for Illumina/SOLiD Sequence Alignment with Guaranteed Recall (Next Generation Sequencing SIG)
|
| 06-25-08 | Lisa Allred, David Hanauer | The Electronic Medical Record Search Engine (EMERSE)
|
| 06-19-08 | Yuanyuan Tian | Efficient Aggregation for Graph Summarization
|
| 06-05-08 | Santiago Schnell | XPP/AUTO: A tool for solving differential equations in computational biology
|
| 05-29-08 | Jean Song, Marisa Conte | MiSearch Evaluation: Pilot Usability Test
|
| 05-22-08 | Vince Chmielewski | Enhancing the NCIBI Development Process with JIRA: Bug tracking, issue tracking and project management software
|
| 05-08-08 | Peter Woolf | Dynamic Bayesian Networks and miniTUBA
|
| 04-17-08 | H.V. Jagadish | MiMI and the NCIBI Suite of Tools
|
| 04-10-08 | Rich McEachin | Orphan Nuclear Receptor, NURR1, a genetic hub regulating cellular responses to lithium
|
| 03-27-08 | David States, Zach Wright | Gene2MeSH: Automated Literature Based Genome Annotation Using MeSH
|
| 03-20-08 | Manhong Dai | Bioinformatics database: maintenance automation, algorithm prototyping, high availability/performance
|
| 03-14-08 | Mark Iwen | Scalable Rule-Based Gene Expression Data Classification
|
| 03-06-08 | Manhong Dai, Justin Wilson | CPU and Storage Clustering for Common Bioinformatics Problems
|
| 02-28-08 | David States | MiMI R2
|
| 02-21-08 | Jim Cavalcoli | MBI-NextGen: Data Warehouse for NCIBI
|
| 02-07-08 | Terry Weymouth | NCIBI Tools: Overall Architecture
|
| 01-31-08 | Alex Ade | NLP with Pubmed Central and Full Text Databases
|
| 01-17-08 | Glenn Tarcea | MiMI Data Build and Merge Process
|
| 12-20-07 | Molly Kleinman | Copyright Essentials for NCIBI
|
| 12-13-07 | Jun Li | Next Generation Sequencing: Principle, Application and Challenge
|
| 11-29-07 | Jing Gao | Cytoscape MiMI Plugin
|
| 11-15-07 | Elvis Jakupovic | Comparative Analysis of Abstracts from the Society for Neuroscience Meetings and Medline: Trends and Fun Facts
|
| 11-08-07 | Dave Strenski | Supercomputing using FPGA
|
| 10-25-07 | Fan Meng | In silico evaluation of Knowledge-based data analysis results
|
| 10-18-07 | Steve Qin | Literature-based distance measure reflects relationship among genes
|
| 10-11-07 | Fan Meng | FunctionScore: a flexible frame work for knowledge-based high throughput data analysis
|
| 10-04-07 | Abhik Shah | Bubble and Bayesian Networks in Biology
|
| 09-27-07 | Maureen Sartor | Improvements in genome-wide Microarray analysis and an application to ChIP-chip (chromatin immunoprecipitation on chip) data |
| 09-20-07 | Ben Keller | Revisiting Genetic Influences
|
| 09-13-07 | Axel Mosig | Reading the Genome between the Lines: Homology Search based non-coding RNA gene finding
|
| 09-06-07 | Naren Ramakrishnan | Compositional Mining of Multi-Relational Biological Datasets
|
| 08-23-07 | Tim Wiggin, Kelli Sullivan | Mouse Models of Diabetic Complications
|
| 08-16-07 | Tim Wiggin, Kelli Sullivan | Microarray Analysis of a Large Tissue Bank of Human Sural Nerves
|
| 08-09-07 | Jim Cavalcoli | Recap of 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)
|
| 07-26-07 | Sandeep Tata | Periscope/SQ: Declarative Querying on Biological Sequence Databases
|
| 07-19-07 | Jignesh Patel | SAGA and TALE update: NCIBI Graph Analysis Tools
|
| 07-12-07 | Andrea Califano | Cancer DBP Presentations NCIBI and MAGNET
|
| 07-05-07 | Rich McEachin | Prioritizing Disease Genes by Analysis of Common Elements (PDG-ACE)
|
| 06-28-07 | Steve Qin | Flexible model-based clustering of gene expression microarray data using Chinese restaurant process
|
| 06-21-07 | Oliver He | Web-based bioinformatics systems for study of pathogen-host interactions
|
| 05-24-07 | Ben Keller | Recommendation within the Resourceome
|
| 05-17-07 | Jim Cavalcoli | Survey of External Tools and Databases for use with NCIBI
|
| 05-10-07 | Terry Weymouth, Tim Wiggin | GenePattern applications and integration in NCIBI
|
| 04-26-07 | Kai Zheng | User Interface Optimization for an Electronic Medical Record System
|
| 04-19-07 | Xiaosong Wang | From identification of a novel urine marker for bladder cancer to construction of human potential cancer targets database
|
| 04-12-07 | Barry Smith | The OBO Foundry: Towards Gold Standard Terminology Resources in the Biomedical Domain |
| 04-05-07 | Manhong Dai, Justin Wilson, Elvis Jakupovic | Supercomputing with Toys
|
| 03-29-07 | Weijian Xuan | PubViz: A Graphic Search Engine of Medline Database
|
| 03-22-07 | Beth Kirschner | NCIBI Portal Workshop
|
| 03-15-07 | Ben Keller | Strategies for Finding Genetic Interactions in Complex Disease
|
| 03-08-07 | Elvis Jakupovic, Bohua Yu | A RDF database for community-wide biomedical knowledge capture, integration and mining
|
| 03-01-07 | Michael Reich | GenePattern 3.0 Preview
|
| 02-22-07 | Robert Murphy | Image Data Integration
|
| 02-15-07 | Sirarat Sarntivijai | An Ontology Describing Cell Lines
|
| 02-08-07 | You Jung Kim | Follow up and next generation MiBLAST
|
| 02-01-07 | Junguk Hur | Defining Reactive Oxidant Genes
|
| 01-25-07 | Doug Hockstad | Overview of Technology Transfer
|
| 01-18-07 | Bohua Yu, Cong Yu | Database Schema Summarization
|
| 01-11-07 | Abhik Shah | Bayesian Networks
|
| 01-04-07 | Terry Weymouth | MiMI
|
| 12-14-06 | Celine Berthier | Gene Expression Regulation in Renal Disease
|
| 12-07-06 | Carlos Santos | NLP Resources at the NCIBI - Data Resources and Corpus Summarization
|
| 11-30-06 | Jim Ottaviani | Deep Blue
|
| 11-16-06 | Chris Mungall | Chado Database
|
| 11-09-06 | Alex Ade | Semantic Integration of NLP
|
| 10-26-06 | David States | Pathways and Microarrays GSEA <> ExpBlast
|
| 10-19-06 | Manhong Dai | Web-based GeneChip Analysis System
|
| 10-12-06 | Damian Fermin | Whole genome proteomics
|
| 10-05-06 | Anthony Fader | Language processing, information retrieval, and summarization using clairlib
|
| 09-28-06 | Beth Kirschner | The Sakai Product, A Collaboration and Learning Environment
|
| 09-14-06 | Adriane Chapman | Current Provenance Practices
|
| 09-07-06 | Arvind Rao | Computational Tools for Understanding Transcriptional Regulation
|
| 07-13-06 | Terry Weymouth | The Design of a geWorkbench Module
|
| 07-05-06 | Barbara Mirel | Interactive Visualizations, Re-envisioning Users' Exploratory Analysis
|
| 06-29-06 | Terry Weymouth | Building a module in GenePattern
|
| 06-22-06 | Anne Jackson | Potential uses of SNP annotation in the analysis of genome-wide association data from the FUSION type 2 diabetes study
|
| 06-15-06 | Aaron Bookvich | An Introduction to Plone & The NCIBI Collaboration Sites
|
| 05-25-06 | Andy Caird | A brief introduction to the Center for Advanced Computing
|
| 05-18-06 | Mark Musen | Biomedical Ontology
|
| 05-11-06 | Michael Reich | Genomic Analysis and Reproducible Research with GenePattern
|
| 05-04-06 | Damian Fermin | Genome Search for Novel ORFs Using the HUPO PPP Data
|
| 04-20-06 | Aris Floratos | geWorkbench
|
| 04-13-06 | Rich McEachin | Understanding Genetic Influences on Susceptibility to Bipolar Disorder
|
| 04-06-06 | You Jung Kim | miBLAST, Scalable evaluation of a batch of nucleotide sequence queries with BLAST
|
| 03-30-06 | Rich McEachin | GeneGo
|
| 03-23-06 | Inna Dubchak | VISTA
|
| 03-16-06 | Glenn Tarcea | MiMI, A Biological Data Warehouse on a native-XML Database
|
| 03-09-06 | David States | NCBI, OMIM and web resources for bioinformatics
|
| 02-23-06 | Abhik Shah | Bayesian Networks
|
| 02-16-06 | Aaron Elkiss | Extensible Information Retrieval with Apache Nutch
|
| 02-09-06 | Dragomir Radev | NLP/IR Tools Developed at the CLAIR Lab
|
| 02-02-06 | Weijian Xuan | Automated Extraction of Genetic Marker Information from Biomedical Literature
|
| 01-26-06 | Carlos Santos | NLP in Biomedicine
|
| 01-19-06 | Yuanyuan Tian | SAGA, A fast and flexible graph matching tool
|
| 12-15-05 | Terry Weymouth | Kepler Workflow System
|
| 12-08-05 | Sirarat Sarntivijai | Gene Pattern
|
| 12-01-05 | Jeremy Phillips | Molecular Biology Integration Database
|
| 01-12-05 | Dan Rhodes | Oncomine
|
NCIBI on Facebook
NCIBI RSS Feed
