Cytoscape Consortium Summer Retreat

University of Michigan, Ann Arbor, MI - July 18-20, 2010

On July 18th-20th, 2010, NCIBI hosted the 7th annual Cytoscape Retreat and Symposium at the New University of Michigan, North Campus Research Complex. The meeting featured a day long symposium on "Networks in Disease and Health", with several featured speakers including Dr. Leroy Hood, and Dr. Stephen Friend. The meeting was jointly hosted by the The Center for Computational Medicine and Bioinformatics and the The National Center for Integrative Biomedical Informatics, and was sponsored and supported by the Cytoscape Consortium and Agilent Laboratories.

For additional details visit the 2010 Cytoscape Consortium Summer Retreat WIKI

Demo and Presentation Video

Sunday, July 18, 2010 (Plugin Demonstrations)

• Giovanni Scardoni
  Analyzing biological networks with CentiScaPe - Video
• Sasha Tkachev
  Web Service Client and Server for PhosphoSitePlus database - Video
• Kozo Nishida
  Importing KEGG pathway and mapping custom node graphics on Cytoscape (Project Web Site) - Video
• Morgan Taschuk
  CID: Exploring Interactomes with Cytoscape - Video
• Terry Weymouth
  Metscape Plugin for Visualization and Analysis of Genes and Metabolites - Video
• Marci Brandenburg and Jean Song
  How to Use Cytoscape: Training the User - Video
• Gregory Hannum
  A Cytoscape plugin for Physical and Genetic Interaction Alignment – PanGIA - Video
• James Vlasblom
  Ortho-Nets: Simultaneous analysis and visualization of protein-interaction network environments of orthologous genes in different organisms - Video
• Jochen Weile
  Concise visualizations of integrated datasets with the OndexView Cytoscape plug-in - Video
• Jason Montojo
  GeneMANIA Cytoscape Plugin: Fast desktop gene function prediction - Video
• Ruth Isserlin
  Enrichment Map: A Cytoscape Plugin to enable visualization and interpretation of Gene-Set Enrichment Analysis - Video
• Barbara Mirel
  Mapping complex cognitive tasks to user requirements - Video
  
• Terry Weymouth
  The Cytoscape MiMI Plugin with the NCIBI/MiMI Attribute Browser - Video
• Gang Su
  Cytoscape plug-ins: GLay v.2 and GSearcher - Video
• John "Scooter" Morris
  CyCommandHandlers - Video

Monday, July 19, 2010 (Networks in Disease and Health Symposium Day)

• Brian Athey, Ph.D., Trey Ideker, Ph.D., Gil Omenn, M.D., Ph.D.
  Welcome Introduction - Video
• Lee Hood, M.D., Ph.D.
  P4 Medicine: Catalyzing a Revolution from Reactive to Proactive Medicine - Video / PDF
• Charlie Boone, Ph.D.
  The Genetic Landscape of a Cell - Video
• Mark Newman, Ph.D.
  Social Networks and the Spread of Infectious Disease - Video
• Eric Neuman, Ph.D.
  Visual Analysis of the Web of Linked Data: the S*QL Plugin for Cytoscape - Video
• Edward Rietman
  Observation of spatial protein-protein interactome dynamics in Arabidopsis root - Video / PDF
• Peter Zandstra
  - Video
• Brian Athey, Ph.D.
  CTSA Biomedical Informatics as a Means to Leverage Local and National Resources to Improve Clinical Research and Translational Effectiveness - Video / PDF
• Stephen Friend, M.D., Ph.D.
  Better Maps of Disease, Not Just What But How, Building a Commons For Evolving Generative Models of Disease - Video / PDF